[1]. Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, et al. (2014), The intestinal metabolome: an intersection between microbiota and host. Gastroenterology;146:1470–6.
[2]. Grice EA, Segre JA. (2012), The Human Microbiome: Our Second Genome. Annual Review of Genomics and Human Genetics;13:151–70.
[3]. Hillman ET, Lu H, Yao T, Nakatsu CH. (2017), Microbial Ecology along the Gastrointestinal Tract. Microbes Environ;32:300–13.
[4]. Shreiner AB, Kao JY, Young VB. (2015), The gut microbiome in health and in disease. Curr Opin Gastroenterol;31:69–75.
[5]. Bagheri S, Zolghadri S, Stanek A. (2022), Beneficial Effects of Anti-Inflammatory Diet in Modulating Gut Microbiota and Controlling Obesity. Nutrients 2022, Vol 14, Page 3985;14:3985.
[6]. Rinninella E, Raoul P, Cintoni M, Franceschi F, Miggiano GAD, Gasbarrini A, et al. (2019), What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases. Microorganisms;7:14.
[7]. Auchtung TA, Fofanova TY, Stewart CJ, Nash AK, Wong MC, Gesell JR, et al. (2018), Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi. MSphere;3:e00092-18.
[8]. Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. (2012), Diversity, stability and resilience of the human gut microbiota. Nature;489:220–30.
[9]. Deo PN, Deshmukh R. (2019), Oral microbiome: Unveiling the fundamentals. J Oral Maxillofac Pathol;23:122–8.
[10]. Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, et al. (2012), Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol;13:R42.
[11]. Scharschmidt TC, Fischbach MA. (2013), What Lives On Our Skin: Ecology, Genomics and Therapeutic Opportunities Of the Skin Microbiome. Drug Discov Today Dis Mech;10:e83–9.
[12]. Belkaid, Y., & Segre, J. A. (2014). Dialogue between skin microbiota and immunity. Science, 346(6212), 954-959.
[13]. Byrd, A. L., Belkaid, Y., & Segre, J. A. (2018). The human skin microbiome. Nature Reviews Microbiology, 16(3), 143-155.
[14]. Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., ... & Segre, J. A. (2009). Topographical and temporal diversity of the human skin microbiome. science, 324(5931), 1190-1192.
[15]. Dickson, R. P., & Huffnagle, G. B. (2015). The lung microbiome: new principles for respiratory bacteriology in health and disease. PLoS pathogens, 11(7), e1004923.
[16]. Leger, A. J. S., Desai, J. V., Drummond, R. A., Kugadas, A., Almaghrabi, F., Silver, P., ... & Caspi, R. R. (2017). An ocular commensal protects against corneal infection by driving an interleukin-17 response from mucosal γδ T cells. Immunity, 47(1), 148-158.
[17]. Marco, M. L. (2021). Defining how microorganisms benefit human health. Microbial Biotechnology, 14(1), 35-40.
[18]. Yamamura, R., Inoue, K. Y., Nishino, K., & Yamasaki, S. (2023). Intestinal and fecal pH in human health. Frontiers in Microbiomes, 2, 1192316.
[19]. Bourassa, M. W., Alim, I., Bultman, S. J., & Ratan, R. R. (2016). Butyrate, neuroepigenetics and the gut microbiome: Can a high fiber diet improve brain health?. Neuroscience letters, 625, 56-63.
[20]. Hernández MAG, Canfora EE, Jocken JWE, Blaak EE. (2019), The Short-Chain Fatty Acid Acetate in Body Weight Control and Insulin Sensitivity. Nutrients;11.
[21]. Byrne CS, Chambers ES, Alhabeeb H, Chhina N, Morrison DJ, Preston T, et al. (2016), Increased colonic propionate reduces anticipatory reward responses in the human striatum to high-energy foods, ,. Am J Clin Nutr;104:5–14.
[22]. Engevik MA, Versalovic J. (2017), Biochemical Features of Beneficial Microbes: Foundations for Therapeutic Microbiology. Microbiol Spectr;5.
[23]. Lee YS, Kim TY, Kim Y, Lee SH, Kim S, Kang SW, et al. (2018) Microbiota-Derived Lactate Accelerates Intestinal Stem-Cell-Mediated Epithelial Development. Cell Host Microbe;24:833-846.e6.
[24]. Iraporda C, Errea A, Romanin DE, Cayet D, Pereyra E, Pignataro O, et al. (2015), Lactate and short chain fatty acids produced by microbial fermentation downregulate proinflammatory responses in intestinal epithelial cells and myeloid cells. Immunobiology;220:1161–9.
[25]. Ruan W, Engevik MA, Spinler JK, Versalovic J. (2020), Healthy Human Gastrointestinal Microbiome: Composition and Function After a Decade of Exploration. Dig Dis Sci;65:695–705.
[26]. Średnicka P, Juszczuk-Kubiak E, Wójcicki M, Akimowicz M, Roszko M. (2021), Probiotics as a biological detoxification tool of food chemical contamination: A review. Food and Chemical Toxicology;153:112306.
[27]. Daniel SL, Moradi L, Paiste H, Wood KD, Assimos DG, Holmes RP, et al. (2021), Forty Years of Oxalobacter formigenes, a Gutsy Oxalate-Degrading Specialist. Appl Environ Microbiol;87:1–20.
[28]. Jiang T, Chen W, Cao L, He Y, Zhou H, Mao H. (2020), Abundance, Functional, and Evolutionary Analysis of Oxalyl-Coenzyme A Decarboxylase in Human Microbiota. Front Microbiol;11:527955.
[29]. Liu Q, Yu Z, Tian F, Zhao J, Zhang H, Zhai Q, et al. (2020), Surface components and metabolites of probiotics for regulation of intestinal epithelial barrier. Microb Cell Fact;19.
[30]. Schwartz M, Canon F, Feron G, Neiers F, Gamero A. (2021), Impact of Oral Microbiota on Flavor Perception: From Food Processing to In-Mouth Metabolization. Foods;10.
[31]. Harris-Tryon TA, Grice EA. (2022), Microbiota and maintenance of skin barrier function. Science;376:940–5.
[32]. Jian C, Carpén N, Helve O, de Vos WM, Korpela K, Salonen A. (2021), Early-life gut microbiota and its connection to metabolic health in children: Perspective on ecological drivers and need for quantitative approach. EBioMedicine; 69.
[33]. Strauch UG, Obermeier F, Grunwald N, Gürster S, Dunger N, Schultz M, et al. (2005), Influence of intestinal bacteria on induction of regulatory T cells: lessons from a transfer model of colitis. Gut;54:1546–52.
[34]. Zhang YJ, Li S, Gan RY, Zhou T, Xu DP, Li H Bin. (2015), Impacts of Gut Bacteria on Human Health and Diseases. Int J Mol Sci;16:7519.
[35]. Zheng D, Liwinski T, Elinav E. (2020), Interaction between microbiota and immunity in health and disease. Cell Research 2020 30:6;30:492–506.
[36]. Guo Y, Chen X, Gong P, Li G, Yao W, Yang W. (2023), The Gut–Organ-Axis Concept: Advances the Application of Gut-on-Chip Technology. Int J Mol Sci;24.
[37]. Appleton J. (2018), The Gut-Brain Axis: Influence of Microbiota on Mood and Mental Health. Integrative Medicine: A Clinician’s Journal;17:32.
[38]. Stecher B, Hardt WD. (2008), The role of microbiota in infectious disease. Trends Microbiol;16:107–14.
[39]. Lee HJ, Kim M. (2022), Skin Barrier Function and the Microbiome. Int J Mol Sci;23:13071.
[40]. Dumas A, Corral D, Colom A, Levillain F, Peixoto A, Hudrisier D, et al. (2018), The host microbiota contributes to early protection against lung colonization by mycobacterium tuberculosis. Front Immunol;9:411523.
[41]. Li JJ, Yi S, Wei L. (2020), Ocular Microbiota and Intraocular Inflammation. Front Immunol;11:609765.
[42]. Deriu E, Liu JZ, Pezeshki M, Edwards RA, Ochoa RJ, Contreras H, et al. (2013), Probiotic bacteria reduce salmonella typhimurium intestinal colonization by competing for iron. Cell Host Microbe;14:26–37.
[43]. Tao Y, Drabik KA, Waypa TS, Musch MW, Alverdy JC, Schneewind O, et al. (2006), Soluble factors from Lactobacillus GG activate MAPKs and induce cytoprotective heat shock proteins in intestinal epithelial cells. American Journal of Physiology-Cell Physiology;290.
[44]. Caruana JC, Walper SA. (2020), Bacterial Membrane Vesicles as Mediators of Microbe - Microbe and Microbe - Host Community Interactions. Front Microbiol;11.
[45]. Matthews GM, Howarth GS, Butler RN. (2012), Short-chain fatty acids induce apoptosis in colon cancer cells associated with changes to intracellular redox state and glucose metabolism. Chemotherapy;58:102–9.
[46]. Hegarty JW, Guinane CM, Ross RP, Hill C, Cotter PD. (2016), Bacteriocin production: a relatively unharnessed probiotic trait? F1000Res;5.
